Opened 9 years ago

Closed 9 years ago

#40 closed task (fixed)

Modification of iRODS dumper

Reported by: Owned by:
Priority: major Milestone: GEC18
Component: OML Version: WrapUp
Keywords: OML, LabWiki, iRODS Cc:

Description (last modified by

  1. Change the iRODS location where the data is pushed (from user’s home directory to gimiadmin home directory) and do not use itickets.

Attachments (1) (3.0 KB) - added by Olivier Mehani 9 years ago.

Download all attachments as: .zip

Change History (10)

comment:1 Changed 9 years ago by Olivier Mehani

Cc: added
Owner: changed from Olivier Mehani to Olivier Mehani

Some details/questions.

  • The IRODS location is not hardcoded in the script, rather, it is passed with --path when the dumper is called; this should probably be address in LabWiki?.
  • I can make the use of itickets (--token) optional, and only add the -t option to ipet when the token is specified; in any case, LabWiki? will keep adding the --token option, so this requires fixes there too.
  • What is the “metadata file”?

comment:2 Changed 9 years ago by Olivier Mehani


comment:3 Changed 9 years ago by

Version: SPIRAL5Sprint5

It sounds like this needs to be reassigned to Jack to have Labwiki pass the new path and not pass the token? We can discuss at the next status meeting (9/16).

I am going to open a separate ticket for the metadata task since it is likely that these will be assigned to different people.

comment:4 Changed 9 years ago by

Description: modified (diff)

A new ticket has been created for the metadata task.

comment:5 Changed 9 years ago by Olivier Mehani

Changed 9 years ago by Olivier Mehani

Attachment: added

comment:6 Changed 9 years ago by

Owner: changed from Olivier Mehani to

Reassigning to Jack to make the necessary changes to Labwiki to call the modified script.

comment:7 Changed 9 years ago by

Status meeting update: ready to test, waiting on remaining functionality to test.

comment:8 Changed 9 years ago by

Version: Sprint5WrapUp

Tested with the latest Labwiki code on emmy9:4400. The path used when I push the "Dump" button is not correct.

This is the information for my test: Project = GIMITesting Context = jo1014Test Slice = joGIMI1014

This is the output when I pressed the "Dump" button: Dump script triggered. Using command: /var/lib/omfwebapps/labwiki/emmy9_config/ --domain geni-johren-2013-10-15T12-59-47-04-00 --path /tempZone/home/rods/user1/measurmentData_jo1014Test Unfortunately we cannot show you the progress.

The home directory should be /geniRenci/home/gimiadmin rather than /tempZone/home/rods The rest of the path should be <project>/<experimentContext>/measurementData

Therefore, the full path in this case should be /geniRenci/home/gimiadmin/GIMITesting/jo1014Test/measurementData

comment:9 Changed 9 years ago by

Resolution: fixed
Status: newclosed

Verified prior to GEC18

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