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Ticket Resolution Summary Owner Reporter
#92 fixed Labwiki times out if I have too many slices johren@bbn.com johren@bbn.com
Description

A couple of the users that I used for testing (johren and gemini70) are members of a project (joIMAutoTest) that I use for scale testing both IM projects. This project currently has 55 slices (most are empty). When I try to login to Labwiki with one of these users, I get the timeout error below. It looks by the stack trace that it is filling a buffer when it tries to load the projects and slices. This could be a problem at GEC if they are a member of the GEC20 project and it has many slices.

Timeout::Error at / Timeout::Error Ruby /home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/protocol.rb: in rescue in rbuf_fill, line 146 Web GET gimi1.casa.umass.edu/ Jump to:

GET POST Cookies ENV

Traceback (innermost first)

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/protocol.rb: in rescue in rbuf_fill

raise Timeout::Error...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/protocol.rb: in rbuf_fill

begin...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/protocol.rb: in readuntil

rbuf_fill...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/protocol.rb: in readline

readuntil("\n").chop...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in read_status_line

str = sock.readline...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in read_new

httpv, code, msg = read_status_line(sock)...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in block in transport_request

res = HTTPResponse.read_new(@socket)...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in catch

res = catch(:response) {...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in transport_request

res = catch(:response) {...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in request

res = transport_request(req, &block)...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in block in request

return request(req, body, &block)...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in start

return yield(self)...

/home/gimiadmin/.rvm/rubies/ruby-1.9.3-p545/lib/ruby/1.9.1/net/http.rb: in request

start {...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/httparty-0.11.0/lib/httparty/request.rb: in perform

self.last_response = http.request(@raw_request) do |http_response|...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/httparty-0.11.0/lib/httparty.rb: in perform_request

Request.new(http_method, path, options).perform(&block)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/httparty-0.11.0/lib/httparty.rb: in get

perform_request Net::HTTP::Get, path, options, &block...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/httparty-0.11.0/lib/httparty.rb: in get

Basement.get(*args, &block)...

/home/gimiadmin/labwiki/lib/labwiki/session_init.rb: in find_or_create

obj = HTTParty.get("#{ges_url}/#{res_path}/#{res_id}")...

/home/gimiadmin/labwiki/lib/labwiki/session_init.rb: in block in update_geni_projects_slices

proj = find_or_create("projects", p[:name], { irods_user: OMF::Web::SessionStore?[:id, :irods_user] })...

/home/gimiadmin/labwiki/lib/labwiki/session_init.rb: in each

OMF::Web::SessionStore?[:projects, :geni_portal].each do |p|...

/home/gimiadmin/labwiki/lib/labwiki/session_init.rb: in update_geni_projects_slices

OMF::Web::SessionStore?[:projects, :geni_portal].each do |p|...

/home/gimiadmin/labwiki/lib/labwiki/session_init.rb: in call

update_geni_projects_slices(user) if LabWiki::Configurator[:gimi]...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/warden-1.2.3/lib/warden/manager.rb: in block in call

@app.call(env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/warden-1.2.3/lib/warden/manager.rb: in catch

result = catch(:warden) do...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/warden-1.2.3/lib/warden/manager.rb: in call

result = catch(:warden) do...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/rack-openid-1.4.2/lib/rack/openid.rb: in call

status, headers, body = @app.call(env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/rack-1.5.2/lib/rack/session/abstract/id.rb: in context

status, headers, body = app.call(env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/rack-1.5.2/lib/rack/session/abstract/id.rb: in call

context(env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/rack-1.5.2/lib/rack/showexceptions.rb: in call

@app.call(env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/rack-cors-0.2.9/lib/rack/cors.rb: in call

status, headers, body = @app.call env...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/connection.rb: in block in pre_process

response = @app.call(@request.env)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/connection.rb: in catch

catch(:async) do...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/connection.rb: in pre_process

catch(:async) do...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/websocket-rack-0.4.0/lib/rack/websocket/extensions/thin/connection.rb: in pre_process_with_websocket

pre_process_without_websocket...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/connection.rb: in process

post_process(pre_process)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/connection.rb: in receive_data

process if @request.parse(data)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/websocket-rack-0.4.0/lib/rack/websocket/extensions/common.rb: in receive_data_with_websocket

receive_data_without_websocket(data)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/websocket-rack-0.4.0/lib/rack/websocket/extensions/common.rb: in receive_data_with_flash_policy_file

receive_data_without_flash_policy_file(data)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/eventmachine-1.0.3/lib/eventmachine.rb: in run_machine

run_machine...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/eventmachine-1.0.3/lib/eventmachine.rb: in run

run_machine...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/backends/base.rb: in start

EventMachine?.run(&starter)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/server.rb: in start

@backend.start { setup_signals if @setup_signals }...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/controllers/controller.rb: in start

server.start...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/runner.rb: in run_command

controller.send(@command, *@arguments)...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/gems/thin-1.6.2/lib/thin/runner.rb: in run!

run_command...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/bundler/gems/omf_web-fc3b04fb44c5/lib/omf-web/thin/runner.rb: in run!

super...

/home/gimiadmin/labwiki/vendor/ruby/1.9.1/bundler/gems/omf_web-fc3b04fb44c5/lib/omf_web.rb: in start

runner.run!...

../lib/labwiki/start.rb: in <main>

OMF::Web.start(opts)...

Request information GET

No GET data. POST

No POST data. 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labwiki.session.4000=BAh7CEkiD3Nlc3Npb25faWQGOgZFRiJFYWZjZDUwMjA0OGJlYzk4N2VkMjEw%0AZGFmOTg4NjhmOTNjMjAyOTRjYTE0OGJhYzVlZTU5YzllNzQxYWZjMzM0ZEki%0ACHNpZAY7AEZJIhVzMTc1NjQyOF8zMzQxMDI3BjsARkkiHHdhcmRlbi51c2Vy%0ALmRlZmF1bHQua2V5BjsAVEkiQ2h0dHBzOi8vcG9ydGFsLmdlbmkubmV0L3Nl%0AcnZlci9zZXJ2ZXIucGhwL2lkcGFnZT91c2VyPWdlbWluaTcwBjsARg%3D%3D%0A--af2af9596b0d7498f812b72f8ea4ab9bb7ac5afe HTTP_HOST gimi1.casa.umass.edu:4000 HTTP_ORIGIN nil HTTP_USER_AGENT Mozilla/5.0 (Macintosh; Intel Mac OS X 10.9; rv:29.0) Gecko/20100101 Firefox/29.0 HTTP_VERSION HTTP/1.1 PATH_INFO / QUERY_STRING REMOTE_ADDR 128.33.251.134 REQUEST_METHOD GET REQUEST_PATH / REQUEST_URI / SCRIPT_NAME SERVER_NAME gimi1.casa.umass.edu SERVER_PORT 4000 SERVER_PROTOCOL HTTP/1.1 SERVER_SOFTWARE thin 1.6.2 codename Doc Brown async.callback #<Method: Thin::Connection#post_process> async.close #<EventMachine::DefaultDeferrable:0x00000004a86b60> async.connection #<Thin::Connection:0x00000005998298 @signature=151003, @request=#<Thin::Request:0x00000004a885f0 @parser=#<Thin::HttpParser:0x00000004a885a0>, @data=nil, @nparsed=697, @body=#<StringIO:0x00000004a88500>, @env={"SERVER_SOFTWARE"=>"thin 1.6.2 codename Doc Brown", "SERVER_NAME"=>"gimi1.casa.umass.edu", "rack.input"=>#<StringIO:0x00000004a88500>, "rack.version"=>[1, 0], "rack.errors"=>#<IO:<STDERR>>, "rack.multithread"=>false, "rack.multiprocess"=>false, "rack.run_once"=>false, "REQUEST_METHOD"=>"GET", "REQUEST_PATH"=>"/", "PATH_INFO"=>"/", "REQUEST_URI"=>"/", "HTTP_VERSION"=>"HTTP/1.1", "HTTP_HOST"=>"gimi1.casa.umass.edu:4000", "HTTP_USER_AGENT"=>"Mozilla/5.0 (Macintosh; Intel Mac OS X 10.9; rv:29.0) Gecko/20100101 Firefox/29.0", "HTTP_ACCEPT"=>"text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8", "HTTP_ACCEPT_LANGUAGE"=>"en-US,en;q=0.5", "HTTP_ACCEPT_ENCODING"=>"gzip, deflate", 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"warden.user.default.key"=>"https://portal.geni.net/server/server.php/idpage?user=gemini70"}, "rack.session.options"=>{:path=>"/", :domain=>nil, :expire_after=>nil, :secure=>false, :httponly=>true, :defer=>false, :renew=>false, :sidbits=>128, :secure_random=>SecureRandom?, :secret=>"4000", :coder=>#<Rack::Session::Cookie::Base64::Marshal:0x000000029fea00>}, "rack.request.query_string"=>"", "rack.request.query_hash"=>{}, "warden"=>Warden::Proxy:39071580 @config={:default_scope=>:default, :scope_defaults=>{}, :default_strategies=>{:_all=>[:openid]}, :intercept_401=>true, :failure_app=>AuthFailureApp?}, 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"warden.user.default.key"=>"https://portal.geni.net/server/server.php/idpage?user=gemini70"}}>, @response=#<Thin::Response:0x00000004a884b0 @headers=, @status=200, @persistent=false, @skip_body=false>, @backend=0.0.0.0:4000, @app=#<Rack::Cors:0x0000000272a608 @app=#<Rack::ShowExceptions:0x000000029fe960 @app=#<Rack::Session::Cookie:0x000000029feb40 @secrets=["4000"], @coder=#<Rack::Session::Cookie::Base64::Marshal:0x000000029fea00>, @app=#<Rack::OpenID:0x000000029feb68 @app=#<Warden::Manager:0x000000029fed70 @config={:default_scope=>:default, :scope_defaults=>{}, :default_strategies=>{:_all=>[:openid]}, :intercept_401=>true, :failure_app=>AuthFailureApp?}, @app=#<SessionInit:0x000000029fee10 @app=#<Rack::URLMap:0x000000029f7250 @mapping=[[nil, "/plugin/experiment/create_iwidget", /^\/+plugin\/+experiment\/+create_iwidget(.*)/n, #<Rack::Builder:0x0000000284d288 @run=#<Proc:0x0000000284d198@/home/gimiadmin/labwiki/lib/labwiki/config.ru:190 (lambda)>, @map=nil, @use=[]>], [nil, "/plugin/source_edit/create_script", /\/+plugin\/+source_edit\/+create_script(.*)/n, #<Rack::Builder:0x0000000284d738 @run=#<Proc:0x0000000284d580@/home/gimiadmin/labwiki/lib/labwiki/config.ru:186 (lambda)>, @map=nil, @use=[]>], [nil, "/disconnect_all_db_connections", /\/+disconnect_all_db_connections(.*)/n, #<Rack::Builder:0x0000000284d530 @run=#<Proc:0x0000000284d378@/home/gimiadmin/labwiki/lib/labwiki/config.ru:182 (lambda)>, @map=nil, @use=[]>], [nil, "/resource/plugin", /\/+resource\/+plugin(.*)/n, #<Rack::Builder:0x00000002d80020 @run=#<LabWiki::PluginResourceHandler:0x00000002d870a0 @root=nil, @headers=nil, @default_mime="text/plain">, @map=nil, @use=[]>], [nil, "/resource/vendor", /\/+resource\/+vendor(.*)/n, #<Rack::Builder:0x00000001fdf4e8 @run=#<OMF::Web::Rack::MultiFile:0x00000002d72c68 @root=nil, @headers=nil, @default_mime="text/plain", @roots=["/home/gimiadmin/labwiki/lib/labwiki/../../htdocs", "./resources", "/home/gimiadmin/labwiki/vendor/ruby/1.9.1/bundler/gems/omf_web-fc3b04fb44c5/lib/omf-web/thin/../../../share/htdocs"], @sub_path=["vendor"], @version=true, @version_map={"backbone"=>"backbone-1.0.0", "bootstrap"=>"bootstrap-3.1.1", "codemirror"=>"CodeMirror?-2.32", "d3"=>"d3-3.0", "jquery"=>"jquery-1.7.2", "jquery-ui"=>"jquery-ui-1.8.23", "mustache"=>"mustache-0.7.0", "raphael"=>"raphael-2.1.0", "silk_icons"=>"silk_icons_v013", "slickgrid"=>"slickgrid-200512", "stacktrace"=>"stacktrace-0.3", "underscore"=>"underscore-1.4.4", "require"=>"require-2.1.8", "require-css"=>"require-css-0.0.7", "font-awesome"=>"font-awesome-4.0.3", "smartmenus"=>"smartmenus-0.9.6"}>, @map=nil, @use=[]>], [nil, "/geni_login", /\/+geni_login(.*)/n, #<Rack::Builder:0x00000001fe0be0 @run=#<Proc:0x00000001fe08c0@/home/gimiadmin/labwiki/lib/labwiki/config.ru:89>, @map=nil, @use=[]>], [nil, "/resource", /\/+resource(.*)/n, #<Rack::Builder:0x00000002d87000 @run=#<OMF::Web::Rack::MultiFile:0x00000002d86038 @root=nil, @headers=nil, @default_mime="text/plain", @roots=["/home/gimiadmin/labwiki/lib/labwiki/../../htdocs", "./resources", "/home/gimiadmin/labwiki/vendor/ruby/1.9.1/bundler/gems/omf_web-fc3b04fb44c5/lib/omf-web/thin/../../../share/htdocs"], @version=nil>, @map=nil, @use=[]>], [nil, "/_content", /\/+_content(.*)/n, #<Rack::Builder:0x00000001f02750 @run=#<OMF::Web::Rack::ContentHandler:0x00000002309790 @logger=#<Log4r::Logger:0x00000002310c98 @fullname="development::OMF::Web::Rack::ContentHandler", @outputters=[], @additive=true, @name="ContentHandler", @path="development::OMF::Web::Rack", @parent=#<Log4r::Logger:0x00000000ee2e10 @fullname="development", @outputters=[#<Log4r::StdoutOutputter:0x00000001376fa8 @mon_owner=nil, @mon_count=0, @mon_mutex=#<Mutex:0x00000001376710>, @name="console", @level=0, @formatter=#<Log4r::PatternFormatter:0x000000013398d8 @depth=7, @pattern="%l %c: %m", @date_pattern="%Y-%m-%d %H:%M:%S", @date_method=nil>, @out=#<IO:<STDOUT>>>], @additive=true, @name="development", @path="", @parent=#<Log4r::RootLogger:0x00000000ee2bb8 @level=0, @outputters=[]>, @level=0, @trace=false>, @level=0, @trace=false>>, @map=nil, @use=[]>], [nil, "/_update", /\/+_update(.*)/n, #<Rack::Builder:0x0000000254f590 @run=#<OMF::Web::Rack::UpdateHandler:0x00000001f028e0>, @map=nil, @use=[]>], [nil, "/labwiki", /\/+labwiki(.*)/n, #<Rack::Builder:0x00000001fe23a0 @run=#<Proc:0x00000001fe15e0@/home/gimiadmin/labwiki/lib/labwiki/config.ru:65>, @map=nil, @use=[]>], [nil, "/_search", /\/+_search(.*)/n, #<Rack::Builder:0x00000002708be8 @run=#<LabWiki::SearchHandler:0x0000000270eea8 @opts={}, @logger=#<Log4r::Logger:0x00000002ebfd00 @fullname="development::LabWiki::SearchHandler", @outputters=[], @additive=true, @name="SearchHandler", @path="development::LabWiki", @parent=#<Log4r::Logger:0x00000000ee2e10 @fullname="development", @outputters=[#<Log4r::StdoutOutputter:0x00000001376fa8 @mon_owner=nil, @mon_count=0, @mon_mutex=#<Mutex:0x00000001376710>, @name="console", @level=0, @formatter=#<Log4r::PatternFormatter:0x000000013398d8 @depth=7, @pattern="%l %c: %m", @date_pattern="%Y-%m-%d %H:%M:%S", @date_method=nil>, @out=#<IO:<STDOUT>>>], @additive=true, @name="development", @path="", @parent=#<Log4r::RootLogger:0x00000000ee2bb8 @level=0, @outputters=[]>, @level=0, @trace=false>, @level=0, @trace=false>>, @map=nil, @use=[]>], [nil, "/_column", /\/+_column(.*)/n, #<Rack::Builder:0x0000000270ee08 @run=#<LabWiki::ColumnHandler:0x0000000284dbe8 @opts={}>, @map=nil, @use=[]>], [nil, "/logout", /\/+logout(.*)/n, #<Rack::Builder:0x00000001fe06b8 @run=#<Proc:0x00000001fdfa60@/home/gimiadmin/labwiki/lib/labwiki/config.ru:100>, @map=nil, @use=[]>], [nil, "/login", /\/+login(.*)/n, #<Rack::Builder:0x00000001fe14c8 @run=#<Proc:0x00000001fe0cf8@/home/gimiadmin/labwiki/lib/labwiki/config.ru:77>, @map=nil, @use=[]>], [nil, "/_ws", /\/+_ws(.*)/n, #<Rack::Builder:0x00000002d85f98 @run=#<OMF::Web::Rack::WebsocketHandler:0x00000002550d78 @options={}>, @map=nil, @use=[]>], [nil, "", /(.*)/n, #<Rack::Builder:0x0000000284da80 @run=#<Proc:0x0000000284d828@/home/gimiadmin/labwiki/lib/labwiki/config.ru:159>, @map=nil, @use=[]>]]>, @logger=#<Log4r::Logger:0x00000002e55180 @fullname="development::SessionInit", @outputters=[], @additive=true, @name="SessionInit", @path="development", @parent=#<Log4r::Logger:0x00000000ee2e10 @fullname="development", @outputters=[#<Log4r::StdoutOutputter:0x00000001376fa8 @mon_owner=nil, @mon_count=0, @mon_mutex=#<Mutex:0x00000001376710>, @name="console", @level=0, @formatter=#<Log4r::PatternFormatter:0x000000013398d8 @depth=7, @pattern="%l %c: %m", @date_pattern="%Y-%m-%d %H:%M:%S", @date_method=nil>, @out=#<IO:<STDOUT>>>], @additive=true, @name="development", @path="", @parent=#<Log4r::RootLogger:0x00000000ee2bb8 @level=0, @outputters=[]>, @level=0, @trace=false>, @level=0, @trace=false>>>, @store=#<OpenID::Store::Filesystem:0x00000001e83a18 @nonce_dir="/tmp/openid_4000/nonces", @association_dir="/tmp/openid_4000/associations", @temp_dir="/tmp/openid_4000/temp">>, @default_options={:path=>"/", :domain=>nil, :expire_after=>nil, :secure=>false, :httponly=>true, :defer=>false, :renew=>false, :sidbits=>128, :secure_random=>SecureRandom?, :secret=>"4000", :coder=>#<Rack::Session::Cookie::Base64::Marshal:0x000000029fea00>}, @key="labwiki.session.4000", @cookie_only=true, @sidbits=128, @sid_secure=SecureRandom?, @sid_length=32>, @template=#<ERB:0x000000029fe938 @safe_level=nil, @src="#coding:US-ASCII\n_erbout = ''; _erbout.concat \"<!DOCTYPE HTML PUBLIC \\\"-//W3C//DTD HTML 4.01 Transitional//EN\\\" \\\"http://www.w3.org/TR/html4/loose.dtd\\\">
n<html lang=
\"en
\">
n<head>
n <meta http-equiv=
\"content-type
\" content=
\"text/html; charset=utf-8
\" />
n <meta name=
\"robots
\" content=
\"NONE,NOARCHIVE
\" />
n <title>\"\n\n\n\n\n; _erbout.concat((h exception.class ).to_s); _erbout.concat \" at \"; _erbout.concat((h path ).to_s); _erbout.concat \"</title>
n <style type=
\"text/css
\">
n html * { padding:0; margin:0; }
n body * { padding:10px 20px; }
n body * * { padding:0; }
n body { font:small sans-serif; }
n body>div { border-bottom:1px solid #ddd; }
n h1 { font-weight:normal; }
n h2 { margin-bottom:.8em; }
n h2 span { font-size:80%; color:#666; font-weight:normal; }
n h3 { margin:1em 0 .5em 0; }
n h4 { margin:0 0 .5em 0; font-weight: normal; }
n table {
n border:1px solid #ccc; border-collapse: collapse; background:white; }
n tbody td, tbody th { vertical-align:top; padding:2px 3px; }
n thead th {
n padding:1px 6px 1px 3px; background:#fefefe; text-align:left;\\n font-weight:normal; font-size:11px; border:1px solid #ddd; }
n tbody th { text-align:right; color:#666; padding-right:.5em; }
n table.vars { margin:5px 0 2px 40px; }
n table.vars td, table.req td { font-family:monospace; }
n table td.code { width:100%;}\\n table td.code div { overflow:hidden; }
n table.source th { color:#666; }
n table.source td {
n font-family:monospace; white-space:pre; border-bottom:1px solid #eee; }
n ul.traceback { list-style-type:none; }
n ul.traceback li.frame { margin-bottom:1em; }
n div.context { margin: 10px 0; }
n div.context ol {
n padding-left:30px; margin:0 10px; list-style-position: inside; }
n div.context ol li {
n font-family:monospace; white-space:pre; color:#666; cursor:pointer; }
n div.context ol.context-line li { color:black; background-color:#ccc; }
n div.context ol.context-line li span { float: right; }
n div.commands { margin-left: 40px; }
n div.commands a { color:black; text-decoration:none; }
n #summary { background: #ffc; }
n #summary h2 { font-weight: normal; color: #666; }
n #summary ul#quicklinks { list-style-type: none; margin-bottom: 2em; }
n #summary ul#quicklinks li { float: left; padding: 0 1em; }
n #summary ul#quicklinks>li+li { border-left: 1px #666 solid; }
n #explanation { background:#eee; }
n #template, #template-not-exist { background:#f6f6f6; }
n #template-not-exist ul { margin: 0 0 0 20px; }
n #traceback { background:#eee; }
n #requestinfo { background:#f6f6f6; padding-left:120px; }
n #summary table { border:none; background:transparent; }
n #requestinfo h2, #requestinfo h3 { position:relative; margin-left:-100px; }
n #requestinfo h3 { margin-bottom:-1em; }
n .error { background: #ffc; }
n .specific { color:#cc3300; font-weight:bold; }
n </style>
n <script type=
\"text/javascript
\">
n <!--
n function getElementsByClassName(oElm, strTagName, strClassName){
n
Written by Jonathan Snook, http://www.snook.ca/jon;\\n Add-ons by Robert Nyman, http://www.robertnyman.com\\n var arrElements = (strTagName ==
\"*
\" && document.all)? document.all :
n oElm.getElementsByTagName(strTagName);
n var arrReturnElements = new Array();
n strClassName = strClassName.replace(/

-/g,
\"



-
\");
n var oRegExp = new RegExp?(
\"(
|



s)
\" + strClassName +
\"(



s|$$)
\");
n var oElement;
n for(var i=0; i<arrElements.length; i++){
n oElement = arrElements[i];
n if(oRegExp.test(oElement.className)){
n arrReturnElements.push(oElement);
n }
n }
n return (arrReturnElements)
n }
n function hideAll(elems) {
n for (var e = 0; e < elems.length; e++) {
n elems[e].style.display = 'none';
n }
n }
n window.onload = function() {
n hideAll(getElementsByClassName(document, 'table', 'vars'));
n hideAll(getElementsByClassName(document, 'ol', 'pre-context'));
n hideAll(getElementsByClassName(document, 'ol', 'post-context'));
n }
n function toggle() {
n for (var i = 0; i < arguments.length; i++) {
n var e = document.getElementById(arguments[i]);
n if (e) {
n e.style.display = e.style.display == 'none' ? 'block' : 'none';
n }
n }
n return false;
n }
n function varToggle(link, id) {
n toggle('v' + id);
n var s = link.getElementsByTagName('span')[0];
n var uarr = String.fromCharCode(0x25b6);
n var darr = String.fromCharCode(0x25bc);
n s.innerHTML = s.innerHTML == uarr ? darr : uarr;
n return false;
n }
n
-->
n </script>
n</head>
n<body>
n
n<div id=
\"summary
\">
n <h1>\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n; _erbout.concat((h exception.class ).to_s); _erbout.concat \" at \"; _erbout.concat((h path ).to_s); _erbout.concat \"</h1>
n <h2>\"\n; _erbout.concat((h exception.message ).to_s); _erbout.concat \"</h2>
n <table><tr>
n <th>Ruby</th>
n <td>
n\"\n\n\n\n; if first = frames.first ; _erbout.concat \"
n <code>\"\n; _erbout.concat((h first.filename ).to_s); _erbout.concat \"</code>: in <code>\"; _erbout.concat((h first.function ).to_s); _erbout.concat \"</code>, line \"; _erbout.concat((h frames.first.lineno ).to_s); _erbout.concat \"
n\"\n; else ; _erbout.concat \"
n unknown location
n\"\n\n; end ; _erbout.concat \"
n </td>
n </tr><tr>
n <th>Web</th>
n <td><code>\"\n\n\n\n; _erbout.concat((h req.request_method ).to_s); _erbout.concat \" \"; _erbout.concat((h(req.host + path)).to_s); _erbout.concat \"</code></td>
n </tr></table>
n
n <h3>Jump to:</h3>
n <ul id=
\"quicklinks
\">
n <li><a href=
\"#get-info
\">GET</a></li>
n <li><a href=
\"#post-info
\">POST</a></li>
n <li><a href=
\"#cookie-info
\">Cookies</a></li>
n <li><a href=
\"#env-info
\">ENV</a></li>
n </ul>
n</div>
n
n<div id=
\"traceback
\">
n <h2>Traceback <span>(innermost first)</span></h2>
n <ul class=
\"traceback
\">
n\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n; frames.each { |frame| ; _erbout.concat \"
n <li class=
\"frame
\">
n <code>\"\n\n; _erbout.concat((h frame.filename ).to_s); _erbout.concat \"</code>: in <code>\"; _erbout.concat((h frame.function ).to_s); _erbout.concat \"</code>
n
n \"\n\n; if frame.context_line ; _erbout.concat \"
n <div class=
\"context
\" id=
\"c\"\n; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"
\">
n \"\n; if frame.pre_context ; _erbout.concat \"
n <ol start=
\"\"\n; _erbout.concat((h frame.pre_context_lineno+1 ).to_s); _erbout.concat \"
\" class=
\"pre-context
\" id=
\"pre\"; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"
\">
n \"\n; frame.pre_context.each { |line| ; _erbout.concat \"
n <li onclick=
\"toggle('pre\"\n; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"', 'post\"; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"')
\">\"; _erbout.concat((h line ).to_s); _erbout.concat \"</li>
n \"\n; } ; _erbout.concat \"
n </ol>
n \"\n\n; end ; _erbout.concat \"
n
n <ol start=
\"\"\n\n; _erbout.concat((h frame.lineno ).to_s); _erbout.concat \"
\" class=
\"context-line
\">
n <li onclick=
\"toggle('pre\"\n; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"', 'post\"; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"')
\">\"; _erbout.concat((h frame.context_line ).to_s); _erbout.concat \"<span>...</span></li></ol>
n
n \"\n\n; if frame.post_context ; _erbout.concat \"
n <ol start='\"\n; _erbout.concat((h frame.lineno+1 ).to_s); _erbout.concat \"' class=
\"post-context
\" id=
\"post\"; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"
\">
n \"\n; frame.post_context.each { |line| ; _erbout.concat \"
n <li onclick=
\"toggle('pre\"\n; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"', 'post\"; _erbout.concat((h frame.object_id ).to_s); _erbout.concat \"')
\">\"; _erbout.concat((h line ).to_s); _erbout.concat \"</li>
n \"\n; } ; _erbout.concat \"
n </ol>
n \"\n\n; end ; _erbout.concat \"
n </div>
n \"\n\n; end ; _erbout.concat \"
n </li>
n\"\n\n; } ; _erbout.concat \"
n </ul>
n</div>
n
n<div id=
\"requestinfo
\">
n <h2>Request information</h2>
n
n <h3 id=
\"get-info
\">GET</h3>
n \"\n\n\n\n\n\n\n\n; if req.GET and not req.GET.empty? ; _erbout.concat \"
n <table class=
\"req
\">
n <thead>
n <tr>
n <th>Variable</th>
n <th>Value</th>
n </tr>
n </thead>
n <tbody>
n \"\n\n\n\n\n\n\n\n\n; req.GET.sort_by { |k, v| k.to_s }.each { |key, val| ; _erbout.concat \"
n <tr>
n <td>\"\n\n; _erbout.concat((h key ).to_s); _erbout.concat \"</td>
n <td class=
\"code
\"><div>\"\n; _erbout.concat((h val.inspect ).to_s); _erbout.concat \"</div></td>
n </tr>
n \"\n\n; } ; _erbout.concat \"
n </tbody>
n </table>
n \"\n\n\n; else ; _erbout.concat \"
n <p>No GET data.</p>
n \"\n\n; end ; _erbout.concat \"
n
n <h3 id=
\"post-info
\">POST</h3>
n \"\n\n\n; if req.POST and not req.POST.empty? ; _erbout.concat \"
n <table class=
\"req
\">
n <thead>
n <tr>
n <th>Variable</th>
n <th>Value</th>
n </tr>
n </thead>
n <tbody>
n \"\n\n\n\n\n\n\n\n\n; req.POST.sort_by { |k, v| k.to_s }.each { |key, val| ; _erbout.concat \"
n <tr>
n <td>\"\n\n; _erbout.concat((h key ).to_s); _erbout.concat \"</td>
n <td class=
\"code
\"><div>\"\n; _erbout.concat((h val.inspect ).to_s); _erbout.concat \"</div></td>
n </tr>
n \"\n\n; } ; _erbout.concat \"
n </tbody>
n </table>
n \"\n\n\n; else ; _erbout.concat \"
n <p>No POST data.</p>
n \"\n\n; end ; _erbout.concat \"
n
n
n <h3 id=
\"cookie-info
\">COOKIES</h3>
n \"\n\n\n\n; unless req.cookies.empty? ; _erbout.concat \"
n <table class=
\"req
\">
n <thead>
n <tr>
n <th>Variable</th>
n <th>Value</th>
n </tr>
n </thead>
n <tbody>
n \"\n\n\n\n\n\n\n\n\n; req.cookies.each { |key, val| ; _erbout.concat \"
n <tr>
n <td>\"\n\n; _erbout.concat((h key ).to_s); _erbout.concat \"</td>
n <td class=
\"code
\"><div>\"\n; _erbout.concat((h val.inspect ).to_s); _erbout.concat \"</div></td>
n </tr>
n \"\n\n; } ; _erbout.concat \"
n </tbody>
n </table>
n \"\n\n\n; else ; _erbout.concat \"
n <p>No cookie data.</p>
n \"\n\n; end ; _erbout.concat \"
n
n <h3 id=
\"env-info
\">Rack ENV</h3>
n <table class=
\"req
\">
n <thead>
n <tr>
n <th>Variable</th>
n <th>Value</th>
n </tr>
n </thead>
n <tbody>
n \"\n\n\n\n\n\n\n\n\n\n\n; env.sort_by { |k, v| k.to_s }.each { |key, val| ; _erbout.concat \"
n <tr>
n <td>\"\n\n; _erbout.concat((h key ).to_s); _erbout.concat \"</td>
n <td class=
\"code
\"><div>\"\n; _erbout.concat((h val ).to_s); _erbout.concat \"</div></td>
n </tr>
n \"\n\n; } ; _erbout.concat \"
n </tbody>
n </table>
n
n</div>
n
n<div id=
\"explanation
\">
n <p>
n You're seeing this error because you use <code>Rack::ShowExceptions?</code>.
n </p>
n</div>
n
n</body>
n</html>
n\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n; _erbout.force_encoding(ENCODING)", @enc=#<Encoding:US-ASCII>, @filename=nil>>, @logger=#<Logger:0x000000027f6578 @progname=nil, @level=1, @default_formatter=#<Logger::Formatter:0x000000027f6528 @datetime_format=nil>, @formatter=nil, @logdev=#<Logger::LogDevice:0x000000027f6370 @shift_size=nil, @shift_age=nil, @filename=nil, @dev=#<IO:<STDOUT>>, @mutex=#<Logger::LogDevice::LogDeviceMutex:0x000000027f6280 @mon_owner=nil, @mon_count=0, @mon_mutex=#<Mutex:0x000000027f6078>>>>, @debug_mode=true, @all_resources=@origins=["*", @resources=@path="*", @methods=[:get, :post, :options, @credentials=true, @max_age=1728000, @pattern=/(.*?)$/, @public_resource=true, @headers=:any, @expose=nil>], @public_resources=true>]>, @threaded=nil, @can_persist=true, @idle=false> rack.errors #<IO:<STDERR>> rack.input #<StringIO:0x00000004a88500> rack.multiprocess false rack.multithread false rack.request.cookie_hash {"labwiki.session.4000"=>"BAh7CEkiD3Nlc3Npb25faWQGOgZFRiJFYWZjZDUwMjA0OGJlYzk4N2VkMjEw\nZGFmOTg4NjhmOTNjMjAyOTRjYTE0OGJhYzVlZTU5YzllNzQxYWZjMzM0ZEki\nCHNpZAY7AEZJIhVzMTc1NjQyOF8zMzQxMDI3BjsARkkiHHdhcmRlbi51c2Vy\nLmRlZmF1bHQua2V5BjsAVEkiQ2h0dHBzOi8vcG9ydGFsLmdlbmkubmV0L3Nl\ncnZlci9zZXJ2ZXIucGhwL2lkcGFnZT91c2VyPWdlbWluaTcwBjsARg==\n--af2af9596b0d7498f812b72f8ea4ab9bb7ac5afe"} rack.request.cookie_string labwiki.session.4000=BAh7CEkiD3Nlc3Npb25faWQGOgZFRiJFYWZjZDUwMjA0OGJlYzk4N2VkMjEw%0AZGFmOTg4NjhmOTNjMjAyOTRjYTE0OGJhYzVlZTU5YzllNzQxYWZjMzM0ZEki%0ACHNpZAY7AEZJIhVzMTc1NjQyOF8zMzQxMDI3BjsARkkiHHdhcmRlbi51c2Vy%0ALmRlZmF1bHQua2V5BjsAVEkiQ2h0dHBzOi8vcG9ydGFsLmdlbmkubmV0L3Nl%0AcnZlci9zZXJ2ZXIucGhwL2lkcGFnZT91c2VyPWdlbWluaTcwBjsARg%3D%3D%0A--af2af9596b0d7498f812b72f8ea4ab9bb7ac5afe rack.request.query_hash {} rack.request.query_string rack.run_once false rack.session {"session_id"=>"afcd502048bec987ed210daf98868f93c20294ca148bac5ee59c9e741afc334d", "sid"=>"s1756428_3341027", "warden.user.default.key"=>"https://portal.geni.net/server/server.php/idpage?user=gemini70"} rack.session.options {:path=>"/", :domain=>nil, :expire_after=>nil, :secure=>false, :httponly=>true, :defer=>false, :renew=>false, :sidbits=>128, :secure_random=>SecureRandom?, :secret=>"4000", :coder=>#<Rack::Session::Cookie::Base64::Marshal:0x000000029fea00>} rack.session.unpacked_cookie_data {"session_id"=>"afcd502048bec987ed210daf98868f93c20294ca148bac5ee59c9e741afc334d", "sid"=>"s1756428_3341027", "warden.user.default.key"=>"https://portal.geni.net/server/server.php/idpage?user=gemini70"} rack.url_scheme http rack.version [1, 0] warden Warden::Proxy:39071580 @config={:default_scope=>:default, :scope_defaults=>{}, :default_strategies=>{:_all=>[:openid]}, :intercept_401=>true, :failure_app=>AuthFailureApp?}

--

#91 fixed fields in Execute pane are ignored jack.hong@nicta.com.au johren@bbn.com
Description

When I try to run the step1_threenode.rb experiment, it has properties for the three sources that default to nodeX-sample10.

defProperty('source1', "nodea-sample10", "ID of a resource") defProperty('source2', "nodeb-sample10", "ID of a resource") defProperty('source3', "nodec-sample10", "ID of a resource")

When I drag this script over to the Execute pane and change source1, source2, and source3 to nodea-joLabwiki70, nodeb-joLabwiki70, and nodec-joLabwiki70. However, when I start the experiment, I see that it is still using "sample10" rather than "joLabwiki70".

This is happening on gimi1.casa.umass.edu.

I tried it on emmy9 and this does not happen there.

#90 fixed 404 error if GENI Portal user is not activated johren@bbn.com johren@bbn.com
Description

I tried logging into Labwiki with a brand new test account that had not yet been activated. When I do this, I get the following error:

Not Found

The requested URL /secure/openid/kmactivate.php was not found on this server.

It is not immediately obvious that the problem is that the user hasn't activated their accounte yet. Is there a way that we can handle this condition and pop up a page that directs the user to log into the portal to activate their account?

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