Changes between Version 1 and Version 2 of JOhrenSandbox/GIMINotes8.1.2012


Ignore:
Timestamp:
08/01/12 17:15:47 (9 years ago)
Author:
Jeanne Ohren
Comment:

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  • JOhrenSandbox/GIMINotes8.1.2012

    v1 v2  
    5050
    5151== 4.  Push I&M measurement results to iRODS archive service  ==
     52  * This is done by the oml2-server-hook.sh script
     53  * I had to do a lot of modification to this script because it is very tailored to the OML server configuration
     54     * Pulls filename and username from the path of the file so it is very dependent upon the filesystem configuration of the server (e.g. home directories are in /users instead of /home)
     55     * Had to make some changes to the ichmod commands to get it to work with my iRODS server
     56  * The hook script currently expects the usernames to begin with "gimi".  I had to modify my script to look specifically for my username.  '''This will not currently work on emmy9 when experimenters use their own credentials'''
    5257
    53 == 6.  Pull I&M measurement results from iRODS archive service to UW ==
     58== 5.  Pull I&M measurement results from iRODS archive service to UW ==
     59  * Ran the tutorial_viz.sh command to pull the results from iRODS and run the R script on it to create the images
     60  * The R script is currently failing and, therefore, not producing the graphs:
     61{{{
     62> mydata1 <- dbGetQuery(con, "select oml_sender_id,begin_interval,size,end_interval from iperf_transfer where oml_sender_id=1")
     63> intervals1 <- mydata1$end_interval - mydata1$begin_interval
     64> throughput1 <- abs(mydata1$size)/intervals1/1024/1024*8
     65Error in abs(mydata1$size) :
     66  Non-numeric argument to mathematical function
     67Execution halted
     68spawn sudo cp johGIM1208011452.png /var/www/
     69[sudo] password for geniuser:
     70cp: cannot stat `johGIM1208011452.png': No such file or directory
     71}}}
    5472
    55 == 5.  Observe I&M measurement results on GIMI presentation service  ==
    56 
     73== 6.  Observe I&M measurement results on GIMI presentation service  ==
    5774
    5875