wiki:GIR4.1_NetKarma

Version 14 (modified by lnevers@bbn.com, 12 years ago) (diff)

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NetKarma Evaluation

This evaluation focuses on the NetKarma project software and documentation made available in March and April 2012:

  1. NetKarma GUSH Adaptor version 2.5.1 and Quick Start Guide for version 2.5.1
  2. NetKarma NS2 Adaptor Version 1.0.0, NetKarma NS2 Adaptor User Manual, and Instructions for the NetKarma Provenance Toolkit for NS2 Experiments
  3. NetKarma Cytoscape Visualization Plug-In Version 1.2.1, and NetKarma Cytoscape Visualization Plug-In Manual for Version 1.2.0

Evaluation Time Frame: April 9, 2012 -??

NetKarma Findings

NetKarma How-to

  1. Using the Quick Start Guide for version 2.5.1 followed to install the Cytoscape visualization tool, the NetKarma Adaptor, and the NetKarma plug-ins for Cytoscape.
  1. Quick Start Guide instructs to download the Cytoscape visualization tool version 2.8.1 or later from http://www.cytoscape.org. Downloaded Cytoscape version 2.8.2 and installed it.

2: Download, build, and configure version 2.5.1 of the NetKarma Adaptor available at: http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz. As suggested, also download NetKarma Adaptor user manual for instructions on building the Adaptor:

  $ wget http://d2i.indiana.edu/sites/default/files/netkarma-gush-adaptor_v2.5_user_manual.pdf
  $ wget http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz
  $ tar xvzf karma-adaptor-2.5.1.tar.gz
  $ cd  Karma-adaptor

Had to install ant package. Need to configure "Karma-Adaptor/config/karma-adaptor.properties" not sure how to fill values yet." Built the adaptor:

lnevers@arendia:~/netkarma/Karma-Adaptor$ ant karma-adaptor
Buildfile: build.xml

clean:

compile:
    [mkdir] Created dir: /home/lnevers/netkarma/Karma-Adaptor/bin
    [javac] Compiling 15 source files to /home/lnevers/netkarma/Karma-Adaptor/bin
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.

karma-adaptor:

BUILD SUCCESSFUL
Total time: 1 second

Set environment variable in adaptor_stdenvs.cfg file:

export ADAPTOR_HOME=/home/lnevers/netkarma/Karma-Adaptor
export JAVA_HOME=/usr/lib/jvm/java-6-openjdk

TO DO:

  $ wget http://d2i.indiana.edu/sites/default/files/ns2adaptor.tar
  $ wget http://d2i.indiana.edu/sites/default/files/netkarma_visualization_plugin-1.2.1.tar.gz

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