128 | | Click "OK", and ran into a connection refused problem... Investigating.... |
| 128 | Click "OK", and ran into a connection refused problem... Investigating.... file needed host and port changes: |
| 129 | Re-ran, and then paste in the ID and click OK. You will be prompted for the location where you wish to save |
| 130 | the provenance graph, and for the name of the output graph. |
| 131 | |
| 132 | [[Image(netkarma-4.jpg)]] |
| 133 | |
| 134 | Now that the graph has been retrieved, click the '''geni''' button in the Cytoscape toolbar, which brings up the ''Import an OPM Graph from xml file'' dialog: |
| 135 | |
| 136 | [[Image(netkarma-5.jpg)]] |
| 137 | |
| 138 | You are then prompted for a provenance graph xml file; select the file you downloaded in the earlier step and click Open. |
| 139 | |
| 140 | [[Image(netkarma-6.jpg)]] |
| 141 | |
| 142 | Once the graph is loaded various visualization fucntions can be used, following is an example that looks at the node attribute for from the provenance graph xml file: |
| 143 | |
| 144 | [[Image(netkarma-7.jpg)]] |