| | 88 | '''Step 4:''' Upload GUSH log with NetKarma Adaptor configured in step 2. |
| | 89 | {{{ |
| | 90 | $ cd Karma-Adaptor |
| | 91 | $ ./provenance_collector.sh -l logs/logfile-sendaria-15555-1333982537.txt |
| | 92 | Connecting to Server... |
| | 93 | Using rulefile: /home/lnevers/netkarma/Karma-Adaptor/deps/cmdline_ruleset.xml |
| | 94 | Creating Notifications... |
| | 95 | Applying dependency rules... |
| | 96 | Ingesting Notifications... |
| | 97 | Number of Notifications = 2 |
| | 98 | Workflow Instance-ID: urn:tool:gush:d494a812-8f6e-4e59-92bd-30e45f36adb4 |
| | 99 | Time to queue notifications for ingestion: 0.706 secs |
| | 100 | }}} |
| | 102 | '''Step 5:''' Start Cytoscape and use the NetKarma Provenance Retrieval Plug-in to download the provenance graph generated from the gush logfile uploaded in step 4. |
| | 103 | |
| | 104 | {{{ |
| | 105 | $ cd cytoscape-2.8.2 |
| | 106 | $ ./cytoscape.sh |
| | 107 | cytoscape.CytoscapeInit[INFO]: CytoscapeInit static initialization |
| | 108 | cytoscape.CytoscapeInit[INFO]: Log information can now be found in the Help->Error Console menu |
| | 109 | cytoscape[INFO]: starting delete action |
| | 110 | cytoscape[INFO]: ending delete action |
| | 111 | cytoscape[INFO]: PreferenceAction()... |
| | 112 | cytoscape.actions.BookmarkAction[INFO]: BookmarkAction()... |
| | 113 | }}} |
| | 114 | The cytoscape.sh script brings up the ''Cytoscap Desktop'' GUI, which looks as follows: |
| | 115 | |
| | 116 | [[Image(netkarma-1)]] |
