Changes between Version 13 and Version 14 of GIR4.1_NetKarma

Timestamp:

04/09/12 16:39:28 (12 years ago)

Author:

lnevers@bbn.com

Comment:

--

GIR4.1_NetKarma

@@ -16 +16 @@
 1. Quick Start Guide instructs to download the Cytoscape visualization tool version 2.8.1 or later from  http://www.cytoscape.org. Downloaded Cytoscape version 2.8.2 and installed it.
 
-Step 2: Download, build, and configure version 2.5.1 of the NetKarma Adaptor available at: http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz.  As suggested, also download NetKarma Adaptor user manual for instructions on building the Adaptor:
+2: Download, build, and configure version 2.5.1 of the NetKarma Adaptor available at: http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz.  As suggested, also download NetKarma Adaptor user manual for instructions on building the Adaptor:
 {{{
   $ wget http://d2i.indiana.edu/sites/default/files/netkarma-gush-adaptor_v2.5_user_manual.pdf
@@ -24 +24 @@
 }}}
 
- Had to install ant package. Need to configure "Karma-Adaptor/config/karma-adaptor.properties" not sure how to fill values yet."
+Had to install ant package. Need to configure "Karma-Adaptor/config/karma-adaptor.properties" not sure how to fill values yet." Built the adaptor:
+{{{
+lnevers@arendia:~/netkarma/Karma-Adaptor$ ant karma-adaptor
+Buildfile: build.xml
 
+clean:
 
+compile:
+    [mkdir] Created dir: /home/lnevers/netkarma/Karma-Adaptor/bin
+    [javac] Compiling 15 source files to /home/lnevers/netkarma/Karma-Adaptor/bin
+    [javac] Note: Some input files use or override a deprecated API.
+    [javac] Note: Recompile with -Xlint:deprecation for details.
+    [javac] Note: Some input files use unchecked or unsafe operations.
+    [javac] Note: Recompile with -Xlint:unchecked for details.
+
+karma-adaptor:
+
+BUILD SUCCESSFUL
+Total time: 1 second
+}}}
+
+Set environment variable in adaptor_stdenvs.cfg file:
+
+{{{
+export ADAPTOR_HOME=/home/lnevers/netkarma/Karma-Adaptor
+export JAVA_HOME=/usr/lib/jvm/java-6-openjdk
+}}}