Changes between Version 12 and Version 13 of GIR4.1_NetKarma
- Timestamp:
- 04/09/12 16:30:23 (12 years ago)
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GIR4.1_NetKarma
v12 v13 12 12 = !NetKarma How-to = 13 13 14 1. Downloaded each of the 3 NetKarma software packages: 14 0. Using the [http://d2i.indiana.edu/sites/default/files/netkarma_version2.5.1_quick_start_guide.pdf Quick Start Guide for version 2.5.1] followed to install the Cytoscape visualization tool, the NetKarma Adaptor, and the NetKarma plug-ins for Cytoscape. 15 16 1. Quick Start Guide instructs to download the Cytoscape visualization tool version 2.8.1 or later from http://www.cytoscape.org. Downloaded Cytoscape version 2.8.2 and installed it. 17 18 Step 2: Download, build, and configure version 2.5.1 of the NetKarma Adaptor available at: http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz. As suggested, also download NetKarma Adaptor user manual for instructions on building the Adaptor: 15 19 {{{ 20 $ wget http://d2i.indiana.edu/sites/default/files/netkarma-gush-adaptor_v2.5_user_manual.pdf 16 21 $ wget http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz 22 $ tar xvzf karma-adaptor-2.5.1.tar.gz 23 $ cd Karma-adaptor 24 }}} 25 26 Had to install ant package. Need to configure "Karma-Adaptor/config/karma-adaptor.properties" not sure how to fill values yet." 27 28 29 30 31 32 TO DO: 33 34 {{{ 35 17 36 $ wget http://d2i.indiana.edu/sites/default/files/ns2adaptor.tar 18 37 $ wget http://d2i.indiana.edu/sites/default/files/netkarma_visualization_plugin-1.2.1.tar.gz