Changes between Version 12 and Version 13 of GIR4.1_NetKarma


Ignore:
Timestamp:
04/09/12 16:30:23 (8 years ago)
Author:
lnevers@bbn.com
Comment:

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  • GIR4.1_NetKarma

    v12 v13  
    1212= !NetKarma How-to =
    1313
    14 1. Downloaded each of the 3 NetKarma software packages:
     140. Using the [http://d2i.indiana.edu/sites/default/files/netkarma_version2.5.1_quick_start_guide.pdf Quick Start Guide for version 2.5.1]  followed to install the Cytoscape visualization tool, the NetKarma Adaptor, and the NetKarma plug-ins for Cytoscape.
     15
     161. Quick Start Guide instructs to download the Cytoscape visualization tool version 2.8.1 or later from  http://www.cytoscape.org. Downloaded Cytoscape version 2.8.2 and installed it.
     17
     18Step 2: Download, build, and configure version 2.5.1 of the NetKarma Adaptor available at: http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz.  As suggested, also download NetKarma Adaptor user manual for instructions on building the Adaptor:
    1519{{{
     20  $ wget http://d2i.indiana.edu/sites/default/files/netkarma-gush-adaptor_v2.5_user_manual.pdf
    1621  $ wget http://d2i.indiana.edu/sites/default/files/karma-adaptor-2.5.1.tar.gz
     22  $ tar xvzf karma-adaptor-2.5.1.tar.gz
     23  $ cd  Karma-adaptor
     24}}}
     25
     26 Had to install ant package. Need to configure "Karma-Adaptor/config/karma-adaptor.properties" not sure how to fill values yet."
     27
     28
     29
     30
     31
     32TO DO:
     33
     34{{{
     35
    1736  $ wget http://d2i.indiana.edu/sites/default/files/ns2adaptor.tar
    1837  $ wget http://d2i.indiana.edu/sites/default/files/netkarma_visualization_plugin-1.2.1.tar.gz